PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G132600.1
Common NameB456_002G132600, LOC105785184
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 224aa    MW: 23965.6 Da    PI: 8.5043
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G132600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002280102123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+k F++   L  H  +H
  Gorai.002G132600.1  80 YKCSVCNKAFNSYQALGGHKASH 102
                         9***********99999998887 PP

2zf-C2H214.79e-05130152123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+ksF++   L  H r+H
  Gorai.002G132600.1 130 HECSICHKSFPTGQALGGHKRRH 152
                         78*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.6E-472103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-1379104IPR007087Zinc finger, C2H2
SuperFamilySSF576673.15E-879152No hitNo description
SMARTSM003550.007180102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.20180102IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
PfamPF139125.2E-13130154IPR007087Zinc finger, C2H2
PROSITE profilePS501579.473130152IPR007087Zinc finger, C2H2
SMARTSM003550.039130152IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MALEALNSPT NAAAPFHFQD TNLHCLDSFT KRKRSKRPRF DDDHVPTEEE YLALCLVMLA  60
RGGAPRTTST TLTHQKLGTY KCSVCNKAFN SYQALGGHKA SHRKLSGGND DHSTPTTSSA  120
VGSNPSGRSH ECSICHKSFP TGQALGGHKR RHYEGGAANT GSITSEGVSS TSTNTTHRDF  180
DLNIPALPAF SPANLFVSGG DEEVESPHPS KKPCLLMQKA TQN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466587.11e-166PREDICTED: zinc finger protein ZAT10-like
SwissprotQ962893e-60ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLA0A0D2QCD51e-166A0A0D2QCD5_G
STRINGVIT_18s0001g09230.t011e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-61salt tolerance zinc finger
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]